Biotechnology: Principles and Processes Questions and Answers

Biology
Biotechnology: Principles and ProcessesWhich one of the following PCR components is present in qPCR but not in conventional PCR?
Taq DNA polymerase
DNA primers
Nucleotides (A, T, G, and C)
MgCl2 (cofactor)
A fluorescent probe

Biology
Biotechnology: Principles and ProcessesDuring the annealing step....
Primers bind to the newly separated DNA strand
The two DNA strands separate at high temperature
The Taq DNA polymerase forms a complex with DNA and histones
The new DNA product is run on an agarose gel

Biology
Biotechnology: Principles and ProcessesWhat is the role of the Taq DNA Polymerase?
Causes the DNA strands to separate
Frames the beginning and end of DNA to be copied
Copies the DNA
Transcribes DNA into mRNA
Reverse transcribe mRNA into cDNA

Biology
Biotechnology: Principles and ProcessesNucleotide triphosphate (dNTPs) are added to the growing DNA strand during the _______ phase
Annealing
Extension/elongation
Denaturation/separation
Preparation

Biology
Biotechnology: Principles and ProcessesWhat would show where within a tissue a gene's mRNA was expressed?
immunohistochemistry.
immunocytochemistry.
bacterial transformation.
RNA in situ hybridization.

Biology
Biotechnology: Principles and ProcessesAccording to the AMA, using an electronic claim instead of paper can provide a savings of as much as ______ in processing costs per claim.
3.73
2.9
6.63
0.6

Biology
Biotechnology: Principles and Processes"DNA fingerprinting" uses RFLPs and gel
electrophoresis in order to map the genetic
differences between two individuals based upon
(A) residue left from their fingerprints at a
crime scene.
(B) slight differences in the lengths of pieces
of their DNA after restriction enzyme
digestion.
(C) single-nucleotide differences within
genes for similar traits.
(D) differential gene expression within the
cells of the two individuals.
(E) the existence of tissue-specific promoter
sequences within short segments of their
DNA.

Biology
Biotechnology: Principles and ProcessesYou are a baker with your own unique strain of baker's yeast species Saccharomyces cerevisiae. From a single colony of your yeast, you isolate genomic DNA and amplify the 18S ribosomal RNA gene by PCR. (The 18S gene is the eukaryotic equivalent of the prokaryotic 165 gene.) When you run the PCR products in an agarose gel, you find a single band of DNA. You observe a single band of DNA
because:
The PCR products have different DNA sequence but are all the same size
The PCR products are different sizes but have the same DNA sequence
The PCR products have the same DNA sequence and are all the same size
The PCR products are different sizes and have different DNA sequences

Biology
Biotechnology: Principles and Processes3. You add an appropriate amount of an antibiotic to a turbid broth culture of bacteria, and
within a few minutes the culture visibly clears.
a) Can you tell the mechanism of action from these results?
b) If so, what is it?
c) If not, what tool would you need to figure it out?

Biology
Biotechnology: Principles and ProcessesEach of the following are features of a cloning vector except
Select one:
a. origin of replication.
b. reverse transcriptases.
c. genetic markers used to screen for recombinants.
d. capacity for large inserts.
e. multiple cloning sites.

Biology
Biotechnology: Principles and ProcessesIf your sample looks too opaque, what adjustment should be made?
Adjust the course focus.
Adjust the fine focus.
Increase the light coming through the diaphragm.
Decrease the light coming through the diaphragm.

Biology
Biotechnology: Principles and ProcessesWhy do we draw our specimens in a circle when using a microscope?
It indicates the viewing field as viewed through the eyepiece.
Squares are boring.
The objective lenses are round.
Ohe adjustment knobs are round.

Biology
Biotechnology: Principles and ProcessesFor control of microbial life, which of the following are included as actions on the microbes to destroy them?
breakdown or cause problems with the cell membrane
cause breakage in the DNA
cause proteins and enzymes to denature (lose shape)
two of these
A, B and C of the above

Biology
Biotechnology: Principles and ProcessesThe role of isopropanol or ethanol in plasmid DNA precipitation is:
1. Isopropanol/ethanol makes plasmid DNA more soluble in aqueous solution
2. Isopropanol/ethanol makes genomic DNA more soluble while it makes the plasmid DNA less soluble, so plasmid DNA is
precipiated
3. Isopropanol/ethanol makes plasmid DNA less hydrophilic (less soluble) in the presence of high salt concentration, so
plasmid DNA falls out of the solution
4. Isopropanol/ethanol links DNA to proteins so that the DNA-protein complex precipitates

Biology
Biotechnology: Principles and ProcessesPolymerase chain reaction requires a DNA polymerase from a bacterium that lives in hot springs.
Tagl
telomerase
T7 DNA polymerase
Pol III

Biology
Biotechnology: Principles and ProcessesDuring the process of DNA replication all the following will occur except:
the molecule unzips
the molecule adds complementary bases to the original strand
the molecule unwinds.
extra phosphates are added.

Biology
Biotechnology: Principles and Processes9. Find the restriction sites and "cut" the DNA in the sequence below. How many bands of
DNA would you see on the electrophoresis gel?
BamI (CCT'AGG) --- 5' CCTAG ¥G 3'; EcoRI (GAATTC) --- 5' GAATTC 3'
3'
5' ACGAATTCAGTATTATCCTAGGTATCCGCCGCCGAATTCTCATCA
3'TGCTTAAGTCATAATAGGATCCATAGGCGGCGGCTTAAGAGTAGT 5'

Biology
Biotechnology: Principles and ProcessesEngineers are often tasked with building structures in places where grasslands and trees once grew. What might be some practical things to include in their building plans to minimize the amount of albedo change that area might experience?

Biology
Biotechnology: Principles and ProcessesStudents set up a controlled experiment. They put five crickets in each of three identical containers. They set one container to 15°C, one to 20°C, and one to 25°C. Then they count the number of cricket chirps in each container during 1 hour. What are two constants in this experiment?
A. The temperature of each container
B. The number of crickets in each container
C. The kind of containers used
D. The number of cricket chirps

Biology
Biotechnology: Principles and ProcessesIf a horticulturist breeding gardenias succeeds in having a single plant with a particularly desirable set of traits, which of the following would be her most probable and efficient route to establishing a line of such plants?
a) Force the plant to self-pollinate to obtain an identical one.
b) Backtrack through her previous experiments to obtain another plant with the same traits.
c) Clone the plant.
d) Breed this plant with another plant with much weaker traits.

Biology
Biotechnology: Principles and ProcessesWhich THREE statements are true about targetting proteins to the nucleus?
A) The nuclear localization sequence is emoved after targetting to the nucleus?
B) The nuclear localization sequence is ocated almost anywhere in protein amino acid sequence.
C) The nuclear localization sequence contains several consecutive basic (Arg or Lys) residues.
D) Aln the cytoplasm, a protein with an appropriate nuclear localization signal (NLS) is bound by a complex of importin ⍺ and ⍴.
E) Importins a and B and CAS are degraded in the nucleus.
F) The nuclear localization sequence usually contains around 20 amino acids.

Biology
Biotechnology: Principles and ProcessesWhat stages are involved in the development of a hybrid cultivar? What are three different type of hybrid crosses? What are some advantages and disadvantages of these different types of crosses?

Biology
Biotechnology: Principles and ProcessesWhat is not an important requirement for an ideal bone tissue engineering scaffold?
A) ceramic-scale stiffnesses.
B) None. These are all important.
C) bioactivity.
D) interconnectivity.
E) architecture.
F) biocompatibility.

Biology
Biotechnology: Principles and ProcessesECOR1 cuts Plasmid T into 3 pieces. Feeling grumpy at your professor (), you decide to take a random enzyme and mix it with a random plasmid, Plasmid M (for mystery). You run a gel and see one very large band at the top of the gel. Which of the following is NOT likely:
a. Plasmid M has zero restriction sites for any enzyme
b. The enzyme and plasmid are not the same as Ecor1 and Plasmid T
c. Plasmid M wasn't cut at all
d. The plasmid does not have a restriction site for the mystery enzyme

Biology
Biotechnology: Principles and ProcessesWhat is balanced pathogenicity? What happens to the interaction between the host and the virus?

Biology
Biotechnology: Principles and ProcessesPolymerase Chain Reaction
is a method used to separate DNA fragment by size.
s a laboratory technique used to make numerous copies of a segment of DNA
is a repeated nucleotide sequence in DNA at a specific location on a chromosome
is a single nucleotide different in DNA at a specific location on a chromosome

Biology
Biotechnology: Principles and ProcessesIn steps 7-10 of the Lab 2 protocol, why does adding SDS, then ádding potassium acetate,
followed by centrifugation, precipitate the proteins and chromosomal DNA out of solution? Why does the RNA not precipitate out? (4 marks)

Biology
Biotechnology: Principles and ProcessesThe term "true-breeding strain or true-breeding-line" is best described
by which of the following statements about pea plants?
A pea plant that when crossed with another pea plant produces the same trait each generation
A pea plant that when allowed to self-fertilize produces several different traits in each generation
A pea plant that when crossed with another pea plant produces different traits in each generation
A pea plant that when allowed to self-fertilize produces the same trait each generation

Biology
Biotechnology: Principles and Processes4. A lab report on a patient with a staphylococcus infection has come back showing that staph
has a Kirby-Bauer result of 31 mm for ampicillin. Why must the physician take each of the
following items into consideration when deciding whether or not to prescribe ampicillin?
a. Kirby-Bauer results
b. Patient history
c. Staph resistance data (use the Antibiotic Zone of Inhibition Table)
d. MIC

Biology
Biotechnology: Principles and ProcessesGizmo Warm-up
Many farmers use chemical herbicides to kill weeds and insecticides to
kill insects. Using genetic engineering, scientists have developed ways to
resist harmful crop pests. In the Genetic Engineering Gizmo, you will use
genetic engineering techniques to create genetically modified corn.
Check that Task 1 is selected. The Gizmo shows petri dishes that contain different strains of bacteria (white
dots) and caterpillars (Lepidoptera sp. larvae). In the first challenge, your goal is to find bacteria that produce
toxins that kill the caterpillars. Click Play
1. What do you observe?
2.
3. Which strains of bacteria were able to kill Lepidoptera sp. larvae?
4
Were some more effective than others? Explain.

Biology
Biotechnology: Principles and ProcessesWhich of the following regarding proteomics is FALSE?
a. Proteomic studies rely upon studying one protein at a time, and use this protein as a model for other
proteins.
b. Proteomic studies often involve analysis of post-translational modification, abundance, and/or turnover of proteins.
c. Mass spectrometry has been important in proteomic studies.
d. Proteomic studies are often technically more difficult than genomic studies because proteins have more variation in their biochemical properties than nucleic acids do.

Biology
Biotechnology: Principles and ProcessesThe figure below shows a snippet of DNA in the process of being replicated. The RNA primer is shown as red while DNA is black. What will happen next? (Hint: Recall the order in which you used enzymes in the DNA replication simulation in Section 2.)
Ligase will seal the nick in the bottom strand.
DNA polymerase I will replace the primer with DNA.
Helicase will separate the strands.
DNA polymerase III will extend the primer.

Biology
Biotechnology: Principles and ProcessesWhat is done to the bacteria to help them take up the plasmids in the environment?
A Incubate them at 30C instead of 37 degrees
B. Mix them with calcium chloride during their growth phase
C. incubate bacteria at 42C for 50 seconds
B and C
A and B

Biology
Biotechnology: Principles and ProcessesAccording to the operon model, for the synthesis of an inducible enzyme such as lactose permease to occur, the
A. end-product must not be in excess.
B. substrate must bind to the enzyme.
C. allolactose must bind to the repressor and inactivate it
D. repressor must bind to the operator.
E. repressor must not be synthesized.

Biology
Biotechnology: Principles and Processes10. A culture of Escherichia coli is heated at 60°C and a series of samples taken at intervals to determine the numbers of survivors. From the data we can calculate the D-value for this strain. The D-value:
A. Tells us how long we need to heat the bacteria at 60°C to achieve the SAL
B. Tells us how long the bacteria needs to be heated at 60°C to achieve a 10-fold reduction in viable counts
C. Allows us to predict how quickly the E. coli would die at 60°C
D. Allows us to predict how quickly E. coli would multiply at 60°C E. Tells us the relationship between temperature and rate of killing

Biology
Biotechnology: Principles and ProcessesHow was bacterial contamination prevented in tissue cultures?

Biology
Biotechnology: Principles and ProcessesQuorum sensing can regulate the production of
O a. Biofilms O b.Bioluminescence O c. Toxins, Biofilms, and Bioluminescence O d. Toxins

Biology
Biotechnology: Principles and ProcessesThe unpaired nucleotides produced by the action of restriction enzymes are referred to as
A. sticky ends.
B. base sequences.
C. single strands.
D. restriction fragments.

Biology
Biotechnology: Principles and ProcessesSouthern blot hybridization is based on hybrization/annealing between:
A. DNA and RNA.
B. DNA and DNA.
C. RNA and RNA.
D. RNA and protein.

Biology
Biotechnology: Principles and ProcessesA scientist prepares a smear with bacteria but forgets to heat fix the smear and uses methylene blue to do a simple stain. Do you think that this error would affect the results? Why?
A. No, it would not affect the results but the bacteria will be still alive
B. Yes, it will affect the results because the heat fix is necessary for an effective staining of bacteria
C. Yes, it will affect the results because the bacterial smear will be washed away during the staining
D. No, it will not affect the results. The results will be better than expected because heat-fixing causes distortion of the cell shape

Biology
Biotechnology: Principles and ProcessesTumor suppressor genes normally code for proteins that inhibit cell division.
True
False

Biology
Biotechnology: Principles and ProcessesHow does the field of science gain knowledge and understanding?
through the testing of hypotheses
through deductive reasoning
by using the latest technologies
by making value judgments

Biology
Biotechnology: Principles and ProcessesThe technique called fluorescence in situ hybridization (FISH) uses
DNA probes with attached fluorescent molecules that indicate specific DNA sequences.
lures to pull out specific sequences from their chromosomes.
stains to sort chromosomes into general size classes, designated A through G.
stains that distinguish AT-rich from GC-rich sequences.

Biology
Biotechnology: Principles and ProcessesA particular triplet of bases in the coding sequence of DNA is AAA. The anticodon on the tRNA that binds the mRNA codon is
UUA
UUU
TTT
AAA
either UAA or TAA, depending on first base wobble.

Biology
Biotechnology: Principles and ProcessesIf transporting a substrate across an intracellular membrane is the limiting factor for an enzyme-catalyzed reaction, then the regulatory process would most likely be
altering the number of enzymes
regulation by sequestering an enzyme into a subcellular organelle
binding the enzyme to a regulatory protein
binding of an enzyme to a substrate

Biology
Biotechnology: Principles and ProcessesYou are interested in obtaining Staphylococcus aureus for a study investigating the prevalence of methicillin-resistant Staphylococcus aureus in the general population. You have received several samples and are ready to start your isolation procedures. Describe the personal protective equipment that would be needed and three different culturing techniques that can be used to obtain organisms to produce pure cultures. State if you use general or selective media and which specific media you would choose. How would you determine if the culture was contaminated? What is the first step you would take if you detected contamination?

Biology
Biotechnology: Principles and ProcessesWhy is it possible for human genes to be expressed in bacteria for manufacturing pharmaceutical products such as insulin?
Point mutations change a single nucleotide base pair
All organisms use the same basic genetic code
Norisense mutations introduce STOP codons into the sequence
RNA viruses can reverse transcribe RNA into DNA
The reading frame groups codons into the correct triplet codes

Biology
Biotechnology: Principles and ProcessesIn Eukaryotic gene regulation, which of the following is part of the transcription initiation complex?
General transcription factors
RNA polymerase II
START codon
Specific transcription factors
RNA polymerase III

Biology
Biotechnology: Principles and ProcessesIn agarose gels, DNA travels
depending on the nucleotide content of the fragment
faster for the large molecules than the small ones
from the positive to the negative electrode
faster for the small molecules than the large ones
from the negative to the positive electrode

Biology
Biotechnology: Principles and ProcessesSean is thinking about using seawater to water his plants. Sean places 10 spider plants near a window for 20 days. Each day he waters five plants with 10ml of seawater and five plants with 10ml of fresh water. By measuring the height of the plants Sean collected:
unreliable data
quantitative data
qualitative data
control data